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Gm8978 predicted gene 8978 [ Mus musculus (house mouse) ]

Gene ID: 668106, updated on 8-Feb-2024

Summary

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Official Symbol
Gm8978provided by MGI
Official Full Name
predicted gene 8978provided by MGI
Primary source
MGI:MGI:3647649
See related
Ensembl:ENSMUSG00000086812 AllianceGenome:MGI:3647649
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG668106
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm8978 in Genome Data Viewer
Location:
19 C1; 19 29.2 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (33590549..33602649, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (33613149..33625249, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene 39S ribosomal protein L33, mitochondrial pseudogene Neighboring gene lipase, member O3 Neighboring gene STARR-seq mESC enhancer starr_45976 Neighboring gene STARR-seq mESC enhancer starr_45977 Neighboring gene 39S ribosomal protein L33, mitochondrial pseudogene Neighboring gene predicted gene, 18293

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Comparative studies of mammalian acid lipases: Evidence for a new gene family in mouse and rat (Lipo). Holmes RS, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2010 Sep. PMID 20598663, Free PMC Article
  2. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. Ozyildirim AM, et al. Invest Ophthalmol Vis Sci, 2005 May. PMID 15851553
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables sterol esterase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in sterol metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Gm8978 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001323251.2 → NP_001310180.1  Gm8978 protein precursor

    Status: VALIDATED

    Source sequence(s)
    AC122846, CK616617, CK616807, CK616901
    Consensus CDS
    CCDS89379.1
    UniProtKB/TrEMBL
    A0A494BBH0
    Related
    ENSMUSP00000158516.2, ENSMUST00000124230.3
    Conserved Domains (3) summary
    PLN02872
    Location:17 → 391
    PLN02872; triacylglycerol lipase
    pfam04083
    Location:33 → 94
    Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
    pfam12695
    Location:77 → 242
    Abhydrolase_5; Alpha/beta hydrolase family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    33590549..33602649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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