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Fam187a family with sequence similarity 187, member A [ Mus musculus (house mouse) ]

Gene ID: 66784, updated on 5-Mar-2024

Summary

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Official Symbol
Fam187aprovided by MGI
Official Full Name
family with sequence similarity 187, member Aprovided by MGI
Primary source
MGI:MGI:1914034
See related
Ensembl:ENSMUSG00000075510 AllianceGenome:MGI:1914034
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4933439F11Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM187A (family with sequence similarity 187 member A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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Location:
11 E1; 11 66.48 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (102775995..102777557)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (102885169..102886731)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene HIG1 domain family, member 1B Neighboring gene elongation factor Tu GTP binding domain containing 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:102742482-102742665 Neighboring gene coiled-coil domain containing 103 Neighboring gene glial fibrillary acidic protein Neighboring gene predicted gene, 34560 Neighboring gene kinesin family member 18B Neighboring gene STARR-seq mESC enhancer starr_30821

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC151146, MGC151148

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Ig-like V-type domain-containing protein FAM187A
Names
ig-like V-type domain-containing protein ENSP00000329499 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025766.2 → NP_080042.1  Ig-like V-type domain-containing protein FAM187A precursor

    See identical proteins and their annotated locations for NP_080042.1

    Status: VALIDATED

    Source sequence(s)
    AK017119
    Consensus CDS
    CCDS48949.1
    UniProtKB/Swiss-Prot
    Q9D3R5, Q9D3Y8
    Related
    ENSMUSP00000097938.4, ENSMUST00000100369.4
    Conserved Domains (2) summary
    smart00410
    Location:49 → 126
    IG_like; Immunoglobulin like
    cl11960
    Location:49 → 135
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    102775995..102777557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D3R5.1 GenPept UniProtKB/Swiss-Prot:Q9D3R5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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