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Gdpd1 glycerophosphodiester phosphodiesterase domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66569, updated on 9-Dec-2024

Summary

Official Symbol
Gdpd1provided by MGI
Official Full Name
glycerophosphodiester phosphodiesterase domain containing 1provided by MGI
Primary source
MGI:MGI:1913819
See related
Ensembl:ENSMUSG00000061666 AllianceGenome:MGI:1913819
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610020H15Rik
Summary
Enables lysophospholipase activity and phosphoric diester hydrolase activity. Acts upstream of or within N-acylethanolamine metabolic process and phospholipid metabolic process. Located in membrane and perinuclear region of cytoplasm. Is expressed in several structures, including adrenal medulla; alimentary system; nervous system; sensory organ; and urinary system. Orthologous to human GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in large intestine adult (RPKM 61.4), testis adult (RPKM 41.0) and 15 other tissues See more
Orthologs
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Genomic context

See Gdpd1 in Genome Data Viewer
Location:
11 C; 11 51.87 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (86924620..86964963, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (87033794..87074137, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene yippee like 2 Neighboring gene predicted gene, 51915 Neighboring gene STARR-seq mESC enhancer starr_30286 Neighboring gene predicted gene, 22387 Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene STARR-positive B cell enhancer ABC_E26 Neighboring gene proline rich 11

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

General gene information

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in endoplasmic reticulum  
located_in endoplasmic reticulum  
is_active_in endoplasmic reticulum membrane  
located_in endoplasmic reticulum membrane  
located_in membrane PubMed 
located_in perinuclear region of cytoplasm PubMed 

General protein information

Preferred Names
lysophospholipase D GDPD1
Names
glycerophosphodiester phosphodiesterase 4
glycerophosphodiester phosphodiesterase domain-containing protein 1
NP_079914.1
XP_036012792.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025638.2NP_079914.1  lysophospholipase D GDPD1

    See identical proteins and their annotated locations for NP_079914.1

    Status: VALIDATED

    Source sequence(s)
    AK013864, AK039183, BY282485, BY697784, CA451251
    Consensus CDS
    CCDS25206.1
    UniProtKB/Swiss-Prot
    Q9CRY7, Q9CT14, Q9D4X7
    Related
    ENSMUSP00000020804.8, ENSMUST00000020804.8
    Conserved Domains (1) summary
    cd08612
    Location:14311
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    86924620..86964963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156899.1XP_036012792.1  lysophospholipase D GDPD1 isoform X1

    Conserved Domains (1) summary
    cd08612
    Location:1242
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
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