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Smim5 small integral membrane protein 5 [ Mus musculus (house mouse) ]

Gene ID: 66528, updated on 5-Mar-2024

Summary

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Official Symbol
Smim5provided by MGI
Official Full Name
small integral membrane protein 5provided by MGI
Primary source
MGI:MGI:1913778
See related
Ensembl:ENSMUSG00000048442 AllianceGenome:MGI:1913778
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210020M01Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in choroid invagination; clavicle; diencephalon roof plate; and metencephalon part of 4th ventricle choroid plexus. Orthologous to human SMIM5 (small integral membrane protein 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E14.5 (RPKM 3.3), liver E14 (RPKM 3.2) and 21 other tissues See more
Orthologs
human all
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Genomic context

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See Smim5 in Genome Data Viewer
Location:
11 E2; 11 80.91 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (115789575..115797095)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115897806..115906269)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_31175 Neighboring gene LLGL2 scribble cell polarity complex component Neighboring gene STARR-seq mESC enhancer starr_31178 Neighboring gene myosin XVB Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:115759828-115760025 Neighboring gene RecQ protein-like 5 Neighboring gene small integral membrane protein 6 Neighboring gene STARR-positive B cell enhancer ABC_E1850 Neighboring gene STARR-seq mESC enhancer starr_31180 Neighboring gene SAP30 binding protein Neighboring gene predicted gene, 39474

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small integral membrane protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183259.3 → NP_899082.1  small integral membrane protein 5

    See identical proteins and their annotated locations for NP_899082.1

    Status: PROVISIONAL

    Source sequence(s)
    AK004370, AL645647, AW124215
    Consensus CDS
    CCDS70347.1
    UniProtKB/Swiss-Prot
    Q8BT42
    Related
    ENSMUSP00000139148.2, ENSMUST00000152171.8
    Conserved Domains (1) summary
    cl24410
    Location:5 → 75
    CASIMO1; Cancer Associated Small Integral Membrane Open reading frame 1 (CASIMO1)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    115789575..115797095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533943.5 → XP_006534006.1  small integral membrane protein 5 isoform X2

    See identical proteins and their annotated locations for XP_006534006.1

    UniProtKB/Swiss-Prot
    Q8BT42
    Related
    ENSMUSP00000138928.2, ENSMUST00000142089.2
    Conserved Domains (1) summary
    cl24410
    Location:5 → 75
    CASIMO1; Cancer Associated Small Integral Membrane Open reading frame 1 (CASIMO1)

  2. XM_006533942.4 → XP_006534005.1  small integral membrane protein 5 isoform X1

    Conserved Domains (1) summary
    cd20254
    Location:29 → 99
    CASIMO1_SMIM5; small integral membrane protein 5 (SMIM5) of CASIMO1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_027815.1: Suppressed sequence

    Description
    NR_027815.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BT42.1 GenPept UniProtKB/Swiss-Prot:Q8BT42

Gene LinkOut

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