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1700029H14Rik RIKEN cDNA 1700029H14 gene [ Mus musculus (house mouse) ]

Gene ID: 66501, updated on 5-Mar-2024

Summary

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Official Symbol
1700029H14Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700029H14 geneprovided by MGI
Primary source
MGI:MGI:1913751
See related
Ensembl:ENSMUSG00000031452 AllianceGenome:MGI:1913751
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C13orf46 (chromosome 13 open reading frame 46). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 163.6) See more
Orthologs
human all
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Genomic context

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Location:
8 A1.1; 8 6.26 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (13600722..13612555, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (13550722..13562555, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene transmembrane protein 255B Neighboring gene growth arrest specific 6 Neighboring gene predicted gene, 53399 Neighboring gene STARR-seq mESC enhancer starr_20769 Neighboring gene STARR-seq mESC enhancer starr_20770 Neighboring gene STARR-positive B cell enhancer ABC_E2857 Neighboring gene RAS p21 protein activator 3 Neighboring gene predicted gene, 34795 Neighboring gene VISTA enhancer mm1751 Neighboring gene STARR-positive B cell enhancer ABC_E10490 Neighboring gene predicted gene, 46032 Neighboring gene STARR-seq mESC enhancer starr_20774 Neighboring gene STARR-seq mESC enhancer starr_20775 Neighboring gene CFAP97 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C13orf46 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080781.2 → NP_001074250.1  uncharacterized protein C13orf46 homolog isoform 2

    See identical proteins and their annotated locations for NP_001074250.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and uses an alternate splice site in the 3' coding region, which results in frameshift, compared to variant 1. The encoded protein (isoform 2) has a distinct C-terminus and is shorter, compared to isoform 1.
    Source sequence(s)
    AK006340, AK006493, AV284229, BY094048
    Consensus CDS
    CCDS40233.1
    UniProtKB/TrEMBL
    G3X906, Q9D4A4
    Related
    ENSMUSP00000140119.2, ENSMUST00000187391.7

  2. NM_025601.3 → NP_079877.1  uncharacterized protein C13orf46 homolog isoform 1

    See identical proteins and their annotated locations for NP_079877.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
    Source sequence(s)
    AK006340, AV284229, BY094048
    Consensus CDS
    CCDS52488.1
    UniProtKB/TrEMBL
    Q9D4A4, Q9D9Y4
    Related
    ENSMUSP00000147812.2, ENSMUST00000209207.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    13600722..13612555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243717.1 → XP_030099577.1  uncharacterized protein C13orf46 homolog isoform X2

  2. XM_030243716.2 → XP_030099576.1  uncharacterized protein C13orf46 homolog isoform X1

    UniProtKB/TrEMBL
    Q9D4A4
Nucleotide Protein Strain
Heading Accession and Version

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