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Gm14393 predicted gene 14393 [ Mus musculus (house mouse) ]

Gene ID: 664987, updated on 8-Feb-2024

Summary

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Official Symbol
Gm14393provided by MGI
Official Full Name
predicted gene 14393provided by MGI
Primary source
MGI:MGI:3649576
See related
Ensembl:ENSMUSG00000078905 AllianceGenome:MGI:3649576
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in genital fat pad adult (RPKM 1.5), bladder adult (RPKM 1.5) and 25 other tissues See more
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Genomic context

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Location:
2 H4; 2 98.24 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (174899747..174983718, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (175057954..175150705, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 40017 Neighboring gene predicted gene, 52571 Neighboring gene STARR-seq mESC enhancer starr_06651 Neighboring gene STARR-seq mESC enhancer starr_06652 Neighboring gene STARR-seq mESC enhancer starr_06654 Neighboring gene STARR-seq mESC enhancer starr_06655 Neighboring gene predicted gene 14444 Neighboring gene STARR-seq mESC enhancer starr_06656 Neighboring gene predicted gene 14387 Neighboring gene STARR-seq mESC enhancer starr_06657 Neighboring gene predicted gene 14439 Neighboring gene STARR-seq mESC enhancer starr_06658 Neighboring gene predicted gene 14399 Neighboring gene STARR-seq mESC enhancer starr_06659 Neighboring gene STARR-positive B cell enhancer mm9_chr2:175032331-175032631 Neighboring gene predicted gene 14391 Neighboring gene predicted gene 14438

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  3. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
novel KRAB box and zinc finger, C2H2 type domain containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085546.2 → NP_001079015.1  novel KRAB box and zinc finger, C2H2 type domain containing protein

    Status: VALIDATED

    Source sequence(s)
    AL845494, CF161713, CF164689
    Consensus CDS
    CCDS50818.1
    UniProtKB/TrEMBL
    A2ARW5
    Related
    ENSMUSP00000072668.4, ENSMUST00000072895.10
    Conserved Domains (3) summary
    COG5048
    Location:86 → 162
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:105 → 125
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3 → 44
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    174899747..174983718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251944.2 → XP_030107804.1  novel KRAB box and zinc finger, C2H2 type domain containing protein isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:54 → 130
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:73 → 93
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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