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Rsl1d1 ribosomal L1 domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66409, updated on 11-Apr-2024

Summary

Official Symbol
Rsl1d1provided by MGI
Official Full Name
ribosomal L1 domain containing 1provided by MGI
Primary source
MGI:MGI:1913659
See related
Ensembl:ENSMUSG00000005846 AllianceGenome:MGI:1913659
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
pBK1; 2410005K20Rik
Summary
Predicted to enable mRNA 3'-UTR binding activity and mRNA 5'-UTR binding activity. Predicted to be involved in maturation of LSU-rRNA; regulation of apoptotic process; and regulation of cellular senescence. Predicted to act upstream of or within regulation of protein localization. Located in nucleolus. Is expressed in several structures, including eye; genitourinary system; liver; lung; and spleen. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 40.8), liver E14 (RPKM 32.8) and 19 other tissues See more
Orthologs
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Genomic context

Location:
16 A1; 16 6.37 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (11010901..11021156, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (11193037..11203292, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930509G22 gene Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene Wdr45 like pseudogene Neighboring gene RIKEN cDNA 2610020C07 gene Neighboring gene STARR-positive B cell enhancer ABC_E7427 Neighboring gene G1 to S phase transition 1 Neighboring gene predicted gene, 57631 Neighboring gene STARR-positive B cell enhancer ABC_E8617

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Endonuclease-mediated (2)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA 5'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in chromosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ribosomal L1 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025546.2NP_079822.1  ribosomal L1 domain-containing protein 1

    See identical proteins and their annotated locations for NP_079822.1

    Status: PROVISIONAL

    Source sequence(s)
    AK075933
    Consensus CDS
    CCDS49763.1
    UniProtKB/Swiss-Prot
    Q8BVY0, Q8K235
    UniProtKB/TrEMBL
    Q3TS64
    Related
    ENSMUSP00000113431.2, ENSMUST00000119953.2
    Conserved Domains (1) summary
    pfam00687
    Location:40259
    Ribosomal_L1; Ribosomal protein L1p/L10e family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    11010901..11021156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)