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Lyrm9 LYR motif containing 9 [ Mus musculus (house mouse) ]

Gene ID: 66274, updated on 5-Mar-2024

Summary

Official Symbol
Lyrm9provided by MGI
Official Full Name
LYR motif containing 9provided by MGI
Primary source
MGI:MGI:1913524
See related
Ensembl:ENSMUSG00000072640 AllianceGenome:MGI:1913524
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810012P15Rik
Summary
Orthologous to human LYRM9 (LYR motif containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 5.5), testis adult (RPKM 5.5) and 28 other tissues See more
Orthologs
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Genomic context

Location:
11 B5; 11 46.74 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (78717421..78734725)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (78826595..78843899)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene cyclin Q Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:78585506-78585689 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:78643849-78644032 Neighboring gene predicted gene, 23219 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:78665507-78665708 Neighboring gene insulin-like growth factor binding protein 4 pseudogene Neighboring gene predicted gene, 19741

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
LYR motif-containing protein 9
Names
UPF0631 protein C17orf108 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076681.2NP_001070149.1  LYR motif-containing protein 9

    See identical proteins and their annotated locations for NP_001070149.1

    Status: VALIDATED

    Source sequence(s)
    AK144380, AL592185
    Consensus CDS
    CCDS36240.1
    UniProtKB/Swiss-Prot
    A1L3P7, Q3UN90
    Related
    ENSMUSP00000127853.2, ENSMUST00000147875.9
    Conserved Domains (1) summary
    pfam13232
    Location:1170
    Complex1_LYR_1; Complex1_LYR-like

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    78717421..78734725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)