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Cystm1 cysteine-rich transmembrane module containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66060, updated on 5-Mar-2024

Summary

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Official Symbol
Cystm1provided by MGI
Official Full Name
cysteine-rich transmembrane module containing 1provided by MGI
Primary source
MGI:MGI:1913310
See related
Ensembl:ENSMUSG00000046727 AllianceGenome:MGI:1913310
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
0610010O12Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CYSTM1 (cysteine rich transmembrane module containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in stomach adult (RPKM 897.0), duodenum adult (RPKM 540.0) and 7 other tissues See more
Orthologs
human all
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Genomic context

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Location:
18 B2; 18 19.46 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (36481677..36536032)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (36348624..36402979)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene purine rich element binding protein A Neighboring gene IgA inducing protein Neighboring gene STARR-positive B cell enhancer ABC_E1952 Neighboring gene predicted gene, 41696 Neighboring gene STARR-seq mESC enhancer starr_44284 Neighboring gene prefoldin 1 Neighboring gene STARR-seq mESC enhancer starr_44287 Neighboring gene STARR-seq mESC enhancer starr_44288 Neighboring gene heparin-binding EGF-like growth factor Neighboring gene predicted gene, 41698

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cysteine-rich and transmembrane domain-containing protein 1
Names
UPF0467 protein C5orf32 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081365.1 → NP_001074834.1  cysteine-rich and transmembrane domain-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC130714
    Consensus CDS
    CCDS37770.1
    UniProtKB/TrEMBL
    D3YWV2, F5H8M7
    Related
    ENSMUSP00000129683.2, ENSMUST00000152804.9

  2. NM_001368637.1 → NP_001355566.1  cysteine-rich and transmembrane domain-containing protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    BC028765
    Consensus CDS
    CCDS89221.1
    UniProtKB/Swiss-Prot
    Q8BMU1, Q8K353
    UniProtKB/TrEMBL
    D3YVS7
    Related
    ENSMUSP00000051708.4, ENSMUST00000050584.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    36481677..36536032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_025328.1: Suppressed sequence

    Description
    NM_025328.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8K353.1 GenPept UniProtKB/Swiss-Prot:Q8K353

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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