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G530011O06Rik RIKEN cDNA G530011O06 gene [ Mus musculus (house mouse) ]

Gene ID: 654820, updated on 8-Feb-2024

Summary

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Official Symbol
G530011O06Rikprovided by MGI
Official Full Name
RIKEN cDNA G530011O06 geneprovided by MGI
Primary source
MGI:MGI:3603513
See related
Ensembl:ENSMUSG00000072844 AllianceGenome:MGI:3603513
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in CNS E18 (RPKM 17.8), bladder adult (RPKM 1.0) and 1 other tissue See more
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Genomic context

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See G530011O06Rik in Genome Data Viewer
Location:
X; X;Y
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (168758039..168761913, complement)
RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (90762409..90766319, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (169975043..169978917, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (90751140..90755050, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene midline 1 Neighboring gene STARR-seq mESC enhancer starr_48284 Neighboring gene capping actin protein of muscle Z-line subunit alpha 1B Neighboring gene predicted gene, 54065 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166407829-166408130 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166408204-166408505 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166410801-166411102 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166413309-166413610 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166414802-166415103 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166415421-166415722 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166417053-166417354 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166417609-166417910 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166419073-166419374 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166420805-166421106 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166422120-166422421 Neighboring gene STARR-seq mESC enhancer starr_48290 Neighboring gene predicted gene 15247 Neighboring gene erythroid differentiation regulator 1 x

Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 20837 Neighboring gene predicted gene, 52481 Neighboring gene midline 1, pseudogene 1 Neighboring gene predicted gene 15247 Neighboring gene erythroid differentiation regulator 1 x Neighboring gene predicted gene, 33272

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029457.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the X chromosome allele.
    Source sequence(s)
    AL672015
    Related
    ENSMUST00000154810.2

  2. NR_137283.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the Y chromosome allele.
    Source sequence(s)
    AC151712

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    168758039..168761913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000087.8 Reference GRCm39 C57BL/6J

    Range
    90762409..90766319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039559.1: Suppressed sequence

    Description
    NM_001039559.1: This RefSeq was permanently suppressed because currently there is limited support for the transcript but not the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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