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Defb44-ps defensin beta 44, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 654454, updated on 8-Feb-2024

Summary

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Official Symbol
Defb44-psprovided by MGI
Official Full Name
defensin beta 44, pseudogeneprovided by MGI
Primary source
MGI:MGI:3646526
See related
Ensembl:ENSMUSG00000070977 AllianceGenome:MGI:3646526
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Defb44; Defb49; EG574082; Defb49-ps
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1 A3; 1 5.7 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (18280277..18293798, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (18210053..18223564, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene NLR family, pyrin domain containing 4F pseudogene Neighboring gene centromere protein E pseudogene Neighboring gene STARR-seq mESC enhancer starr_00369 Neighboring gene STARR-seq mESC enhancer starr_00370 Neighboring gene cysteine-rich secretory protein 4 Neighboring gene STARR-seq mESC enhancer starr_00371 Neighboring gene STARR-seq mESC enhancer starr_00372 Neighboring gene defensin beta 18 Neighboring gene defensin beta 41 Neighboring gene nucleolin pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract. Patil AA, et al. Physiol Genomics, 2005 Sep 21. PMID 16033865

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • defensin beta 49 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002879.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC161367
    Related
    ENSMUST00000126871.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    18280277..18293798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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