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TCAF2P1 TRPM8 channel associated factor 2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 653691, updated on 10-Oct-2023

Summary

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Official Symbol
TCAF2P1provided by HGNC
Official Full Name
TRPM8 channel associated factor 2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33603
See related
AllianceGenome:HGNC:33603
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM115D; FAM139B; TCAF2BP
Expression
Ubiquitous expression in esophagus (RPKM 4.4), placenta (RPKM 3.6) and 25 other tissues See more
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Genomic context

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Location:
7q35
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (143809990..143815389)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (145090339..145095739)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (143507083..143512482)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 Neighboring gene ribosomal protein L26 pseudogene 24 Neighboring gene family with sequence similarity 115, member C pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18727 Neighboring gene uncharacterized LOC112267988 Neighboring gene TRPM8 channel associated factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26794 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26795 Neighboring gene uncharacterized LOC105375549 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:143598237-143598774

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • family with sequence similarity 115, member D (pseudogene)
  • family with sequence similarity 139, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110549.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099548, BG748361, CB046449

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    143809990..143815389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654714.1 Reference GRCh38.p14 PATCHES

    Range
    354290..359691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    145090339..145095739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_008025.2: Suppressed sequence

    Description
    NG_008025.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases