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WASH7P WASP family homolog 7, pseudogene [ Homo sapiens (human) ]

Gene ID: 653635, updated on 10-Oct-2023

Summary

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Official Symbol
WASH7Pprovided by HGNC
Official Full Name
WASP family homolog 7, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:38034
See related
AllianceGenome:HGNC:38034
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM39F; WASH5P
Expression
Ubiquitous expression in spleen (RPKM 40.8), skin (RPKM 39.5) and 25 other tissues See more
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Genomic context

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See WASH7P in Genome Data Viewer
Location:
1p36.33
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (14362..29370, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (14362..29370, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene DEAD/H-box helicase 11 like 1 (pseudogene) Neighboring gene microRNA 6859-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20498-21346 Neighboring gene MIR1302-2 host gene Neighboring gene microRNA 1302-2 Neighboring gene family with sequence similarity 138 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Human subtelomeric WASH genes encode a new subclass of the WASP family. Linardopoulou EV, et al. PLoS Genet, 2007 Dec. PMID 18159949, Free PMC Article
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • WAS protein family homolog 5 pseudogene
  • WAS protein family homolog 7, pseudogene
  • family with sequence similarity 39, member F

Clone Names

  • FLJ35264, FLJ50976, FLJ51139, FLJ99967

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024540.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK310121, AK310139, AL627309, BU616084, DA054875, DA143319

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    14362..29370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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