U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SORD2P sorbitol dehydrogenase 2, pseudogene [ Homo sapiens (human) ]

Gene ID: 653381, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
SORD2Pprovided by HGNC
Official Full Name
sorbitol dehydrogenase 2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:49919
See related
Ensembl:ENSG00000290387 AllianceGenome:HGNC:49919
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SORD2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
15q21.1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (44825747..44884694, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (42633761..42692703, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (45117945..45176892, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:45021095-45022080 Neighboring gene ring finger protein 4 pseudogene Neighboring gene tripartite motif containing 69 Neighboring gene Sharpr-MPRA regulatory region 4328 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:45084988-45085176 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:45098626-45098830 Neighboring gene Sharpr-MPRA regulatory region 4183 Neighboring gene uncharacterized LOC105370798 Neighboring gene RNA, U1 small nuclear 119, pseudogene Neighboring gene telomere repeat binding bouquet formation protein 2 pseudogene Neighboring gene 5-azacytidine induced 2 pseudogene Neighboring gene RNA, U6 small nuclear 1108, pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Structural and evolutionary characterization of the human sorbitol dehydrogenase gene duplication. Carr IM, et al. Mamm Genome, 1998 Dec. PMID 9880675
  2. Identification and characterisation of a sequence related to human sorbitol dehydrogenase. Carr IM, et al. Eur J Biochem, 1997 May 1. PMID 9183016
  3. Molecular genetic analysis of the human sorbitol dehydrogenase gene. Carr IM, et al. Mamm Genome, 1995 Sep. PMID 8535074
  4. Comparative genomics search for losses of long-established genes on the human lineage. Zhu J, et al. PLoS Comput Biol, 2007 Dec. PMID 18085818, Free PMC Article
  5. Identification of genes related to Parkinson's disease using expressed sequence tags. Kim JM, et al. DNA Res, 2006 Dec 31. PMID 17213182

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

Other Names

  • SORD pseudogene

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146393.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC120778, AC122108

  2. NR_146394.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122108, BU151661, DT218022
    Related
    ENST00000561384.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    44825747..44884694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187605.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    150087..216558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    42633761..42692703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_008173.3: Suppressed sequence

    Description
    NG_008173.3: This RefSeq was removed because it is now thought that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases