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FAM153CP family with sequence similarity 153 member C, pseudogene [ Homo sapiens (human) ]

Gene ID: 653316, updated on 3-Dec-2023

Summary

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Official Symbol
FAM153CPprovided by HGNC
Official Full Name
family with sequence similarity 153 member C, pseudogeneprovided by HGNC
Gene description
protein FAM153C
Primary source
HGNC:HGNC:33936
See related
Ensembl:ENSG00000204677 AllianceGenome:HGNC:33936
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM153C; NY-REN-7-like
Expression
Biased expression in testis (RPKM 25.3), spleen (RPKM 6.3) and 6 other tissues See more
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Genomic context

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Location:
5q35.3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (178007692..178063588)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (178559018..178615001)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (177434693..177490589)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:177423395-177423894 Neighboring gene PROP paired-like homeobox 1 Neighboring gene ankyrin repeat domain 18A pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr5:177436962-177437506 Neighboring gene DLCR-2B recombination region Neighboring gene ribosomal protein L19 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16707 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16708 Neighboring gene uncharacterized LOC124901147 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23733 Neighboring gene CRISPRi-validated cis-regulatory element chr5.4886 Neighboring gene uncharacterized LOC105377754

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article
  5. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • family with sequence similarity 153, member C
  • protein FAM153C

Clone Names

  • FLJ60013

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149722.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136632, AC136940
    Related
    ENST00000651508.1

  2. NR_159407.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC101341, BC131737
    Related
    ENST00000398106.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    178007692..178063588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    178559018..178615001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001079527.1: Suppressed sequence

    Description
    NM_001079527.1: This RefSeq was permanently suppressed because there is insufficient support for the transcript.

  2. NM_001355471.1: Suppressed sequence

    Description
    NM_001355471.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  3. NR_038353.1: Suppressed sequence

    Description
    NR_038353.1: This RefSeq was removed because it is thought to be partial.
Nucleotide Protein
Heading Accession and Version

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