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BTF3L4P2 basic transcription factor 3 like 4 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 653189, updated on 10-Oct-2023

Summary

Official Symbol
BTF3L4P2provided by HGNC
Official Full Name
basic transcription factor 3 like 4 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:39646
See related
AllianceGenome:HGNC:39646
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BTF3L4P
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Genomic context

Location:
2q24.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (159003650..159004718)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (159465685..159466753)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (159860162..159861230)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene tRNA-Glu (anticodon CTC) 7-1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_53476 Neighboring gene VISTA enhancer hs1477 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_53495 Neighboring gene RNA, U2 small nuclear 21, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr2:159819504-159820084 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12040 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12041 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16681 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:159851555-159852212 Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 Neighboring gene VISTA enhancer hs2027 Neighboring gene RNA, U6 small nuclear 580, pseudogene Neighboring gene glutathione S-transferase mu 3 pseudogene 2

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
A three-stage genome-wide association study identifies a susceptibility locus for late radiotherapy toxicity at 2q24.1.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006120.5 

    Range
    101..1169
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    159003650..159004718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    159465685..159466753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)