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PRAMENP PRAME N-terminal like, pseudogene [ Homo sapiens (human) ]

Gene ID: 649179, updated on 10-Oct-2023

Summary

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Official Symbol
PRAMENPprovided by HGNC
Official Full Name
PRAME N-terminal like, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:34302
See related
Ensembl:ENSG00000290847 AllianceGenome:HGNC:34302
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRAMEL; PRAMEF24P
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
22q11.22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (21991099..22043934, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (22404651..22457485, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (22345496..22398332, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22292226-22293032 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22293033-22293840 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22293841-22294647 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22298307-22298806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22306489-22307009 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22318681-22319182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22319183-22319682 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63111 Neighboring gene PPM1F antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22336585-22337571 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1F Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr22:22372768-22373375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18713 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18715 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22384595-22385375 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:22385376-22386155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18719 Neighboring gene DNA topoisomerase III beta Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22411410-22412173 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:22412174-22412936 Neighboring gene immunoglobulin lambda variable (IV)-66-1 (pseudogene) Neighboring gene immunoglobulin lambda variable (I)-70 (pseudogene) Neighboring gene immunoglobulin lambda variable 10-67 (pseudogene) Neighboring gene immunoglobulin lambda variable 4-69 Neighboring gene immunoglobulin lambda variable (I)-68 (pseudogene) Neighboring gene immunoglobulin lambda variable (V)-66 (pseudogene) Neighboring gene immunoglobulin lambda locus

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • PRAME family member 24, pseudogene
  • preferentially expressed antigen in melanoma-like

Clone Names

  • FLJ16327

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135291.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA743646, AC245452, AK131325
    Related
    ENST00000337471.8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    21991099..22043934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    22404651..22457485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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