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RPS16P5 ribosomal protein S16 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 647190, updated on 10-Oct-2023

Summary

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Official Symbol
RPS16P5provided by HGNC
Official Full Name
ribosomal protein S16 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:36183
See related
AllianceGenome:HGNC:36183
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS16_3_702
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Genomic context

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Location:
6p12.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (53334460..53337617, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (53174193..53177350, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (53199258..53202415, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901332 Neighboring gene ELOVL fatty acid elongase 5 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92203 Neighboring gene microRNA 5685 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24694 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:53169169-53169692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24695 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24696 Neighboring gene Sharpr-MPRA regulatory region 4240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17289 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:53224161-53224669 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:53224670-53225177 Neighboring gene ribosomal protein L31 pseudogene 28 Neighboring gene ribosomal protein L31 pseudogene 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046241.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL034374

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    53334460..53337617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    53174193..53177350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_010106.1: Suppressed sequence

    Description
    NG_010106.1: This RefSeq was permanently suppressed because there is evidence that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version

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