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RPL23AP42 ribosomal protein L23a pseudogene 42 [ Homo sapiens (human) ]

Gene ID: 647099, updated on 10-Oct-2023

Summary

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Official Symbol
RPL23AP42provided by HGNC
Official Full Name
ribosomal protein L23a pseudogene 42provided by HGNC
Primary source
HGNC:HGNC:35942
See related
Ensembl:ENSG00000234851 AllianceGenome:HGNC:35942
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23A_13_431
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Genomic context

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Location:
3q26.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (161429072..161429612, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (164203838..164204378, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (161146860..161147400, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:161088778-161089332 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:161089333-161089887 Neighboring gene uncharacterized LOC107986150 Neighboring gene serine palmitoyltransferase small subunit B Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:161138438-161139086 Neighboring gene long intergenic non-protein coding RNA 2067 Neighboring gene NANOG hESC enhancer GRCh37_chr3:161239249-161239878 Neighboring gene otolin 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:161391567-161392552 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:161399217-161400416 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:161425075-161425576 Neighboring gene NANOG hESC enhancer GRCh37_chr3:161577576-161578142 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_65796 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_65864 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:161759312-161759863 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_65908 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_65925 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_65935 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_65957 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66022 Neighboring gene uncharacterized LOC107986048

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6. Humphries JD, et al. Sci Signal, 2009 Sep 8. PMID 19738201, Free PMC Article
  3. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
  4. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • hCG16001

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010965.4 

    Range
    101..641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    161429072..161429612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    164203838..164204378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001093758.2: Suppressed sequence

    Description
    NM_001093758.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

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