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RPS18P9 ribosomal protein S18 pseudogene 9 [ Homo sapiens (human) ]

Gene ID: 645958, updated on 10-Oct-2023

Summary

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Official Symbol
RPS18P9provided by HGNC
Official Full Name
ribosomal protein S18 pseudogene 9provided by HGNC
Primary source
HGNC:HGNC:36483
See related
AllianceGenome:HGNC:36483
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS18_6_767
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Genomic context

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Location:
6q25.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (149593616..149594602)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (150793350..150794335)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (149914752..149915738)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase like 4 Neighboring gene RNA, U7 small nuclear 3 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25262 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149868072-149868748 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25263 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25264 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25265 Neighboring gene glycosylated integral membrane protein 1 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene katanin catalytic subunit A1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25266 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17664

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_077247.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC071678, BQ020488, EB387363

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    149593616..149594602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    150793350..150794335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_010375.1: Suppressed sequence

    Description
    NG_010375.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
Nucleotide Protein
Heading Accession and Version

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