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RPL6P27 ribosomal protein L6 pseudogene 27 [ Homo sapiens (human) ]

Gene ID: 645387, updated on 10-Oct-2023

Summary

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Official Symbol
RPL6P27provided by HGNC
Official Full Name
ribosomal protein L6 pseudogene 27provided by HGNC
Primary source
HGNC:HGNC:36133
See related
Ensembl:ENSG00000235552 AllianceGenome:HGNC:36133
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL6_10_1582
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Genomic context

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Location:
18p11.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (6462110..6463029, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (6622608..6623527, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (6462109..6463028, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:6382344-6383130 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:6383131-6383916 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9267 Neighboring gene microRNA 4317 Neighboring gene RNA, U6 small nuclear 349, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13061 Neighboring gene long intergenic non-protein coding RNA 1387 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:6556659-6557352 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:6557353-6558046 Neighboring gene uncharacterized LOC105371972 Neighboring gene uncharacterized LOC107985176 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:6570281-6571070 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:6571071-6571861 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:6575977-6576203 Neighboring gene RNA, 7SL, cytoplasmic 282, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of virus-host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Neveu G, et al. Methods, 2012 Dec. PMID 22898364, Free PMC Article
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009652.2 

    Range
    101..1020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    6462110..6463029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    6622608..6623527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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