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FAM86C2P family with sequence similarity 86 member C2, pseudogene [ Homo sapiens (human) ]

Gene ID: 645332, updated on 10-Oct-2023

Summary

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Official Symbol
FAM86C2Pprovided by HGNC
Official Full Name
family with sequence similarity 86 member C2, pseudogeneprovided by HGNC
Gene description
family with sequence similarity 86, member A pseudogene
Primary source
HGNC:HGNC:42392
See related
Ensembl:ENSG00000290994 AllianceGenome:HGNC:42392
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable methyltransferase activity. Predicted to be involved in methylation. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thyroid (RPKM 3.6), kidney (RPKM 2.2) and 25 other tissues See more
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Genomic context

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Location:
11q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (67791767..67805336, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (67786963..67800535, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (67559238..67572807, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:67525335-67525862 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:67525863-67526388 Neighboring gene uncharacterized LOC105369358 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:67526917-67527442 Neighboring gene EVA1C pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:67555733-67556440 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:67559082-67559894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67560708-67561519 Neighboring gene ALG1 like 8, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67570465-67570966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67570967-67571466 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67573265-67573766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67573767-67574266 Neighboring gene translation initiation factor IF-2-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67593458-67593966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67593967-67594475 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 7 Neighboring gene NANOG hESC enhancer GRCh37_chr11:67610458-67611043 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:67624072-67624744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67640251-67640752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67640753-67641252 Neighboring gene long intergenic non-protein coding RNA 2754

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The DNA sequence, annotation and analysis of human chromosome 3. Muzny DM, et al. Nature, 2006 Apr 27. PMID 16641997
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • Putative protein FAM86A-like 1
  • family with sequence similarity 86, member A pseudogene

Clone Names

  • FLJ31209

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024249.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AP003716
    Related
    ENST00000529253.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    67791767..67805336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    67786963..67800535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_024379.1: Suppressed sequence

    Description
    NG_024379.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NEL3.1 GenPept UniProtKB/Swiss-Prot:A6NEL3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials