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FLJ43315 asparagine synthetase pseudogene [ Homo sapiens (human) ]

Gene ID: 644316, updated on 10-Oct-2023

Summary

Gene symbol
FLJ43315
Gene description
asparagine synthetase pseudogene
See related
Ensembl:ENSG00000291012
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
9q13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (64016950..64061612)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (76928252..76972915, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Unplaced Scaffold NT_113961.1 (48503..93165)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene FSHD region gene 1 family member J, pseudogene Neighboring gene MPRA-validated peak7254 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:68468609-68469276 Neighboring gene COBW domain containing 3 pseudogene Neighboring gene MT-CO3 pseudogene 36 Neighboring gene MT-CO1 pseudogene 36 Neighboring gene U6 spliceosomal RNA Neighboring gene SOWAHC pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • asparagine synthetase (glutamine-hydrolyzing) pseudogene

Clone Names

  • FLJ43315, MGC71858

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033856.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AK125305
    Related
    ENST00000680973.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    64016950..64061612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    76928252..76972915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)