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PRKAG2-AS2 PRKAG2 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 644090, updated on 5-Mar-2024

Summary

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Official Symbol
PRKAG2-AS2provided by HGNC
Official Full Name
PRKAG2 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:40467
See related
Ensembl:ENSG00000242048
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in duodenum (RPKM 3.2), small intestine (RPKM 2.4) and 3 other tissues See more
Orthologs
all
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Genomic context

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Location:
7q36.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (151806338..151810820)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (152978926..152983407)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (151503424..151507906)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:151161805-151162306 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26864 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18816 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26865 Neighboring gene RNA, 7SL, cytoplasmic 76, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:151187724-151188264 Neighboring gene Ras homolog, mTORC1 binding Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26866 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:151216232-151216661 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18819 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18820 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18821 Neighboring gene eukaryotic translation termination factor 1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26867 Neighboring gene MPRA-validated peak6846 silencer Neighboring gene Sharpr-MPRA regulatory region 3106 Neighboring gene MPRA-validated peak6847 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151289181-151289681 Neighboring gene protein kinase AMP-activated non-catalytic subunit gamma 2 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:151300425-151300977 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18822 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151377353-151378020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151379739-151380324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151380325-151380908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151380909-151381493 Neighboring gene VISTA enhancer hs2193 Neighboring gene VISTA enhancer hs2194 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:151401658-151401849 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151417955-151418476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151421977-151422477 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:151423711-151424574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26869 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:151432471-151433128 Neighboring gene VISTA enhancer hs2199 Neighboring gene VISTA enhancer hs2200 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18824 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18825 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151481003-151481892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151481893-151482782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151487603-151488104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151491193-151492090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151493035-151493617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151493618-151494199 Neighboring gene MPRA-validated peak6848 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151535109-151535690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151551046-151551566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151551567-151552087 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26872 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18826 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18827 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151584831-151585642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151585643-151586454 Neighboring gene PRKAG2 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151587423-151587923 Neighboring gene RNA, U6 small nuclear 604, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171033.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093583
    Related
    ENST00000462083.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    151806338..151810820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    152978926..152983407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001354885.2: Suppressed sequence

    Description
    NM_001354885.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

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