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RPL17P34 ribosomal protein L17 pseudogene 34 [ Homo sapiens (human) ]

Gene ID: 643863, updated on 10-Oct-2023

Summary

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Official Symbol
RPL17P34provided by HGNC
Official Full Name
ribosomal protein L17 pseudogene 34provided by HGNC
Primary source
HGNC:HGNC:36756
See related
Ensembl:ENSG00000213432 AllianceGenome:HGNC:36756
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL17_10_1081
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Genomic context

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See RPL17P34 in Genome Data Viewer
Location:
10q23.33
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (93283966..93284579, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (94163928..94164540, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (95043723..95044336, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 10607 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3783 Neighboring gene Sharpr-MPRA regulatory region 3565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3784 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3785 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:94897634-94898833 Neighboring gene NIP7 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 1522 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:94971549-94972076 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:94972077-94972602 Neighboring gene Sharpr-MPRA regulatory region 9432 Neighboring gene X-ray repair cross complementing 6 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:94998327-94998890 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:94998891-94999453 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2627 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:95032253-95032820 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:95032821-95033387 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:95033388-95033954 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:95036319-95037196 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:95040553-95041220 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:95041221-95041890 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:95041891-95042559 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:95048576-95049775 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:95049831-95050331 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:95093669-95094868 Neighboring gene myoferlin Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:95143829-95144328 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:95143327-95143828 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:95166463-95166962 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:95195537-95196098 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:95196661-95197860 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:95219557-95220179 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:95229071-95229920 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2628 Neighboring gene RNA, 5S ribosomal pseudogene 323 Neighboring gene centrosomal protein 55

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010111.3 

    Range
    101..714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    93283966..93284579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    94163928..94164540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases