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CDC42P6 CDC42 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 643751, updated on 10-Oct-2023

Summary

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Official Symbol
CDC42P6provided by HGNC
Official Full Name
CDC42 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:44430
See related
AllianceGenome:HGNC:44430
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4p15.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (22727294..22728023, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (22709074..22709803, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (22728917..22729646, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor A3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:22524554-22525248 Neighboring gene microRNA 12115 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:22626384-22627086 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:22627087-22627788 Neighboring gene ribosomal protein S27 pseudogene 13 Neighboring gene uncharacterized LOC105374521 Neighboring gene glucosylceramidase beta 3 (gene/pseudogene) Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:22885626-22886228 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:22944496-22945376 Neighboring gene uncharacterized LOC105374524 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:23098384-23099583 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:23236030-23237229 Neighboring gene uncharacterized LOC105374523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21367 Neighboring gene Sharpr-MPRA regulatory region 1330

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human CDC42 gene: genomic organization, evidence for the existence of a putative pseudogene and exclusion as a SJS1 candidate gene. Nicole S, et al. Hum Genet, 1999 Jul-Aug. PMID 10480361

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • cell division cycle 42 (GTP binding protein, 25kDa) pseudogene
  • cell division cycle 42 pseudogene 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008215.5 

    Range
    101..830
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    22727294..22728023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791774.1 Reference GRCh38.p14 PATCHES

    Range
    49087..49816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    22709074..22709803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001089595.1: Suppressed sequence

    Description
    NM_001089595.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

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