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SCGB1B2P secretoglobin family 1B member 2, pseudogene [ Homo sapiens (human) ]

Gene ID: 643719, updated on 10-Oct-2023

Summary

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Official Symbol
SCGB1B2Pprovided by HGNC
Official Full Name
secretoglobin family 1B member 2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:20741
See related
AllianceGenome:HGNC:20741
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SCGB4A1P
Expression
Ubiquitous expression in testis (RPKM 1.4), thyroid (RPKM 1.2) and 25 other tissues See more
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Genomic context

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Location:
19q13.11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (34576729..34677159, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (37121324..37221748, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (35067634..35168064, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein S26 pseudogene 55 Neighboring gene zinc finger protein 807, pseudogene Neighboring gene uncharacterized LOC105372374 Neighboring gene secretoglobin family 2B member 2 Neighboring gene zinc finger protein 530-like Neighboring gene secretoglobin family 2B member 3, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:35154774-35155274 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35167555-35168452 Neighboring gene secretoglobin family 1B member 3, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35168453-35169349 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35170207-35170708 Neighboring gene zinc finger protein 302 Neighboring gene secretoglobin family 2B member 1, pseudogene Neighboring gene secretoglobin family 1B member 1, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. Jackson BC, et al. Hum Genomics, 2011 Oct. PMID 22155607, Free PMC Article
  2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • CTD-2378H7.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027620.4 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  2. NR_170957.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  3. NR_170958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  4. NR_170959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  5. NR_170960.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  6. NR_170961.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  7. NR_170962.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  8. NR_170963.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  9. NR_170964.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  10. NR_170965.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  11. NR_170966.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  12. NR_170967.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  13. NR_170968.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

  14. NR_170969.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020910, AC022143

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    34576729..34677159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    37121324..37221748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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