U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PAFAH1B2P2 PAFAH1B2 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 643711, updated on 16-Jan-2024

Summary

Go to the top of the page Help
Official Symbol
PAFAH1B2P2provided by HGNC
Official Full Name
PAFAH1B2 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:54906
See related
Ensembl:ENSG00000293309 AllianceGenome:HGNC:54906
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
12q23.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (97713412..97756517, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (97686565..97729663, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (98107190..98150295, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr12:97913914-97914415 Neighboring gene rhabdomyosarcoma 2 associated transcript Neighboring gene microRNA 1251 Neighboring gene microRNA 135a-2 Neighboring gene NFE2L2 motif-containing MPRA enhancer 214 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:98002200-98002744 Neighboring gene NANOG hESC enhancer GRCh37_chr12:98033470-98033981 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:98050058-98050648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4749 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:98117503-98118004 Neighboring gene RNA, U6 small nuclear 36, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:98145599-98146798 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:98178628-98179251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:98291588-98292138 Neighboring gene microRNA 4495 Neighboring gene microRNA 4303

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

Other Names

  • platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene
  • platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) pseudogene

Clone Names

  • FLJ25775

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_077240.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC007424, BC024008
    Related
    ENST00000550548.1

  2. NR_077241.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses alternate 5' and 3' exon structure and is shorter than variant 1.
    Source sequence(s)
    AK098641
    Related
    ENST00000552582.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    97713412..97756517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    97686565..97729663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006969.4: Suppressed sequence

    Description
    NG_006969.4: This RefSeq was permanently suppressed because it is now thought that this gene is not a pseudogene but a transcribed gene with no protein product.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases