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TPM4P2 TPM4 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 643634, updated on 10-Oct-2023

Summary

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Official Symbol
TPM4P2provided by HGNC
Official Full Name
TPM4 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:56401
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3p24.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (27632811..27635017)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (27634930..27637102)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (27674302..27676508)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377005 Neighboring gene RNA, U1 small nuclear 96, pseudogene Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:27566771-27567407 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:27574095-27575037 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27575038-27575981 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:27590442-27590942 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:27590943-27591443 Neighboring gene Sharpr-MPRA regulatory region 2897 Neighboring gene ribosomal protein S27 pseudogene 11 Neighboring gene uncharacterized LOC124906221 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:27678933-27679535 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:27696095-27696881 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14152 Neighboring gene KIAA1143 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • tropomyosin 4 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030109.2 

    Range
    101..2307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    27632811..27635017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    27634930..27637102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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