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LOC643554 ornithine aminotransferase pseudogene [ Homo sapiens (human) ]

Gene ID: 643554, updated on 10-Oct-2023

Summary

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Gene symbol
LOC643554
Gene description
ornithine aminotransferase pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC643554 in Genome Data Viewer
Location:
Xp11.23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (48152993..48155971, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (47563143..47566123, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (48012421..48015399, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene SSX family member 6, pseudogene Neighboring gene sperm acrosome associated 5B Neighboring gene RNA, U6 small nuclear 707, pseudogene Neighboring gene SSX family member 13, pseudogene Neighboring gene S100A11 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Long-range organization of reiterated sequences, including the SSX1 cDNA at the OATL1 cluster in Xp11.23. Chand A, et al. Genomics, 1995 Dec 10. PMID 8825641
  2. Ornithine aminotransferase-related sequences map to two nonadjacent intervals on the human X chromosome short arm. Lafreniere RG, et al. Genomics, 1991 May. PMID 1675195
  3. Chromosomal localization of human ornithine aminotransferase gene sequences to 10q26 and Xp11.2. Barrett DJ, et al. Invest Ophthalmol Vis Sci, 1987 Jul. PMID 3596985

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005844.4 

    Range
    101..3079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    48152993..48155971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    47563143..47566123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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