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KPNA2P1 karyopherin subunit alpha 2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 643513, updated on 10-Oct-2023

Summary

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Official Symbol
KPNA2P1provided by HGNC
Official Full Name
karyopherin subunit alpha 2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:52871
See related
Ensembl:ENSG00000236530 AllianceGenome:HGNC:52871
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See KPNA2P1 in Genome Data Viewer
Location:
4q21.21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (80079411..80081370)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (83409705..83411664)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (81000565..81002524)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA75 Neighboring gene prostate cancer associated transcript 4 Neighboring gene MPRA-validated peak5063 silencer Neighboring gene ANTXR cell adhesion molecule 2 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:80859151-80859758 Neighboring gene MPRA-validated peak5064 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr4:80885254-80885815 Neighboring gene uncharacterized LOC124900918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21652 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21653 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:80997503-80998702 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:81002404-81003603 Neighboring gene uncharacterized LOC124900724 Neighboring gene CRISPRi-validated cis-regulatory element chr4.2002 Neighboring gene CRISPRi-validated cis-regulatory element chr4.2004 Neighboring gene ribosomal protein SA pseudogene 39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022064.4 

    Range
    101..2060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    80079411..80081370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    83409705..83411664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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