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RNPS1P1 RNA binding protein with serine rich domain 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 643446, updated on 10-Oct-2023

Summary

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Official Symbol
RNPS1P1provided by HGNC
Official Full Name
RNA binding protein with serine rich domain 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:39525
See related
AllianceGenome:HGNC:39525
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNPS1P1 in Genome Data Viewer
Location:
4p15.33
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (11368821..11373749)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (11344880..11349810)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (11370445..11375373)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2498 Neighboring gene uncharacterized LOC105374479 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:10807763-10808962 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:10855215-10855716 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:10855717-10856216 Neighboring gene NANOG hESC enhancer GRCh37_chr4:10946361-10946898 Neighboring gene Sharpr-MPRA regulatory region 8730 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:10965707-10966380 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11067600-11068246 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11150486-11151153 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11218597-11219141 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11219142-11219685 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:11227260-11227455 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11232380-11233128 Neighboring gene uncharacterized LOC105374488 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11385598-11386169 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:11398409-11399608 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21321 Neighboring gene microRNA 572 Neighboring gene RNA, 5S ribosomal pseudogene 156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21322 Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:11506548-11507747 Neighboring gene uncharacterized LOC107986178 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:11633687-11634886 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:11651807-11653006 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:11700041-11701240 Neighboring gene long intergenic non-protein coding RNA 2360

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation of a transcriptional map for a 700-kb region surrounding the polycystic kidney disease type 1 (PKD1) and tuberous sclerosis type 2 (TSC2) disease genes on human chromosome 16p3.3. Burn TC, et al. Genome Res, 1996 Jun. PMID 8828041

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • RNA binding protein S1, serine-rich domain pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023467.3 

    Range
    101..5029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    11368821..11373749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    11344880..11349810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases