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CCT6P3 chaperonin containing TCP1 subunit 6 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 643180, updated on 10-Oct-2023

Summary

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Official Symbol
CCT6P3provided by HGNC
Official Full Name
chaperonin containing TCP1 subunit 6 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:35137
See related
Ensembl:ENSG00000290860 AllianceGenome:HGNC:35137
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCT6-3P
Expression
Ubiquitous expression in testis (RPKM 5.5), prostate (RPKM 4.9) and 25 other tissues See more
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Genomic context

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See CCT6P3 in Genome Data Viewer
Location:
7q11.21
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65038354..65074713)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (66244538..66280907)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (64498732..64535091)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375330 Neighboring gene RNA, U6 small nuclear 1229, pseudogene Neighboring gene uncharacterized LOC105375329 Neighboring gene MPRA-validated peak6535 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18198 Neighboring gene vitamin K epoxide reductase complex subunit 1 like 1 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:64503075-64503587 Neighboring gene MPRA-validated peak6536 silencer Neighboring gene uncharacterized LOC124901663 Neighboring gene small nucleolar RNA, H/ACA box 22C Neighboring gene small nucleolar RNA, H/ACA box 15B-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:64540973-64541867 Neighboring gene general transcription factor IIi pseudogene 14 Neighboring gene uncharacterized LOC124901662

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. Mukherjee K, et al. BMC Evol Biol, 2010 Mar 1. PMID 20193073, Free PMC Article
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3

Clone Names

  • DKFZp779B0634

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033416.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073210, BC071617
    Related
    ENST00000426828.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    65038354..65074713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    66244538..66280907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005630.4: Suppressed sequence

    Description
    NG_005630.4: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

  2. NG_026586.1: Suppressed sequence

    Description
    NG_026586.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

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Chemical Information
Molecular Biology Databases