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CCDC137P1 CCDC137 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 642802, updated on 10-Oct-2023

Summary

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Official Symbol
CCDC137P1provided by HGNC
Official Full Name
CCDC137 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33459
See related
Ensembl:ENSG00000242609 AllianceGenome:HGNC:33459
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCDC137P
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Genomic context

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Location:
3p13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (72086860..72087858)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (72126831..72127829)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (72136011..72137009)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:72067180-72068379 Neighboring gene UBE2Q2 pseudogene 9 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72073913-72074414 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72074415-72074914 Neighboring gene long intergenic non-protein coding RNA 877 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72096703-72097203 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20068 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20069 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20070 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72136311-72137027 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72137028-72137745 Neighboring gene CCDC137 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20071 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:72148884-72149724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72184639-72185213 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20072 Neighboring gene long intergenic non-protein coding RNA 870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20076 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72226281-72226881 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14526 Neighboring gene Sharpr-MPRA regulatory region 12200 Neighboring gene NANOG hESC enhancer GRCh37_chr3:72242807-72243499 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:72245432-72246000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72252370-72252906 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72252907-72253442 Neighboring gene uncharacterized LOC124909393

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • coiled-coil domain containing 137 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009746.2 

    Range
    101..1099
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    72086860..72087858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    72126831..72127829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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