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FAM230E family with sequence similarity 230 member E [ Homo sapiens (human) ]

Gene ID: 642643, updated on 10-Oct-2023

Summary

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Official Symbol
FAM230Eprovided by HGNC
Official Full Name
family with sequence similarity 230 member Eprovided by HGNC
Primary source
HGNC:HGNC:52450
See related
Ensembl:ENSG00000182824 AllianceGenome:HGNC:52450
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01662
Expression
Restricted expression toward testis (RPKM 8.8) See more
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Genomic context

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See FAM230E in Genome Data Viewer
Location:
22q11.21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (18733935..18757905)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (18910225..19131343)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (18721448..18745418)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 26 pseudogene 2 Neighboring gene protein phosphatase 1 regulatory subunit 26 pseudogene 4 Neighboring gene OCT4 hESC enhancer GRCh37_chr22:18717837-18718338 Neighboring gene OCT4 hESC enhancer GRCh37_chr22:18721144-18721645 Neighboring gene family with sequence similarity 247 member C Neighboring gene gamma-glutamyltransferase 3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence. Delihas N. PLoS One, 2018. PMID 29668722, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • long intergenic non-protein coding RNA 1662

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136561.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008132
    Related
    ENST00000342888.3

  2. NR_165635.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008132

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    18733935..18757905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    18910225..19131343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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