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RPSAP54 ribosomal protein SA pseudogene 54 [ Homo sapiens (human) ]

Gene ID: 642641, updated on 10-Oct-2023

Summary

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Official Symbol
RPSAP54provided by HGNC
Official Full Name
ribosomal protein SA pseudogene 54provided by HGNC
Primary source
HGNC:HGNC:36373
See related
Ensembl:ENSG00000213621 AllianceGenome:HGNC:36373
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPSA_26_1300
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Genomic context

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Location:
13q12.11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (20961234..20962268)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (20154346..20155381)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (21535373..21536407)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 367 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 30 Neighboring gene peptidylprolyl isomerase A pseudogene 27 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:21549761-21550262 Neighboring gene large tumor suppressor kinase 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:21571219-21571758 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:21572540-21573076 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7428 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:21608126-21608626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:21609627-21610451 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:21611543-21612531 Neighboring gene RNA, U4 small nuclear 9, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011364.3 

    Range
    101..1135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    20961234..20962268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    20154346..20155381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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