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Zfp964 zinc finger protein 964 [ Mus musculus (house mouse) ]

Gene ID: 636741, updated on 8-Feb-2024

Summary

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Official Symbol
Zfp964provided by MGI
Official Full Name
zinc finger protein 964provided by MGI
Primary source
MGI:MGI:3646490
See related
Ensembl:ENSMUSG00000091764 AllianceGenome:MGI:3646490
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm7187; EG636741; 4732490P12
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including ZNF44 (zinc finger protein 44); ZNF442 (zinc finger protein 442); and ZNF563 (zinc finger protein 563). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 1.3), bladder adult (RPKM 0.6) and 26 other tissues See more
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Genomic context

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Location:
8 B3.3; 8 33.88 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (70107113..70119782)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (69654463..69667132)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_21739 Neighboring gene STARR-positive B cell enhancer mm9_chr8:72085257-72085558 Neighboring gene cadherin 11 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr8:72095951-72096251 Neighboring gene STARR-positive B cell enhancer mm9_chr8:72098669-72098969 Neighboring gene STARR-positive B cell enhancer mm9_chr8:72103212-72103513 Neighboring gene STARR-positive B cell enhancer mm9_chr8:72105793-72106094 Neighboring gene zinc finger protein 868 Neighboring gene STARR-positive B cell enhancer ABC_E9116 Neighboring gene STARR-positive B cell enhancer ABC_E453 Neighboring gene STARR-seq mESC enhancer starr_21742 Neighboring gene STARR-positive B cell enhancer ABC_E9117 Neighboring gene STARR-positive B cell enhancer ABC_E242 Neighboring gene zinc finger protein 869 Neighboring gene predicted gene, 51532

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177527.1 → NP_001170998.1  zinc finger-like protein

    See identical proteins and their annotated locations for NP_001170998.1

    Status: VALIDATED

    Source sequence(s)
    AC157564
    Consensus CDS
    CCDS85549.1
    UniProtKB/TrEMBL
    B2RR88
    Related
    ENSMUSP00000145354.2, ENSMUST00000204285.3
    Conserved Domains (5) summary
    smart00349
    Location:4 → 46
    KRAB; krueppel associated box
    COG5048
    Location:110 → 459
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 41
    KRAB; KRAB box
    pfam13465
    Location:231 → 256
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    70107113..70119782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242316.2 → XP_011240618.1  zinc finger-like protein isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:118 → 467
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:395 → 415
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:11 → 52
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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