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2010315B03Rik RIKEN cDNA 2010315B03 gene [ Mus musculus (house mouse) ]

Gene ID: 630836, updated on 8-Feb-2024

Summary

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Official Symbol
2010315B03Rikprovided by MGI
Official Full Name
RIKEN cDNA 2010315B03 geneprovided by MGI
Primary source
MGI:MGI:1919321
See related
Ensembl:ENSMUSG00000074829 AllianceGenome:MGI:1919321
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF101 (zinc finger protein 101). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 6.2), frontal lobe adult (RPKM 3.2) and 24 other tissues See more
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Genomic context

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Location:
9; 9 F4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (124054432..124075349, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (124291802..124312719, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5117 Neighboring gene C-C motif chemokine receptor 5 Neighboring gene predicted gene, 39469 Neighboring gene NLR family, pyrin domain containing 4G Neighboring gene predicted gene, 20783

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC630836

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243117.1 → NP_001230046.1  uncharacterized protein LOC630836 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AA178344, AK008571, CAAA01180111, CK618160
    Conserved Domains (5) summary
    smart00349
    Location:29 → 70
    KRAB; krueppel associated box
    COG5048
    Location:98 → 454
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:186 → 206
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:29 → 68
    KRAB; KRAB box
    pfam13465
    Location:226 → 251
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001243118.1 → NP_001230047.1  uncharacterized protein LOC630836 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon and includes an alternate in-frame exon in the coding region, compared to variant 1. The resulting protein (isoform 2) is shorter, compared to isoform 1.
    Source sequence(s)
    AA178344, AK008571, CAAA01180111, CN530830
    Conserved Domains (5) summary
    smart00349
    Location:25 → 66
    KRAB; krueppel associated box
    COG5048
    Location:94 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:182 → 202
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:25 → 64
    KRAB; KRAB box
    pfam13465
    Location:222 → 247
    zf-H2C2_2; Zinc-finger double domain

  3. NM_001243119.1 → NP_001230048.1  uncharacterized protein LOC630836 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an in-frame exon in the coding region, compared to variant 1. The resulting protein (isoform 3) is shorter, compared to isoform 1.
    Source sequence(s)
    AA178344, AK008571, BC029716, CAAA01180111
    Consensus CDS
    CCDS81096.1
    UniProtKB/TrEMBL
    J3QK55
    Related
    ENSMUSP00000137258.3, ENSMUST00000177714.8
    Conserved Domains (5) summary
    smart00349
    Location:4 → 45
    KRAB; krueppel associated box
    COG5048
    Location:73 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:161 → 181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 43
    KRAB; KRAB box
    pfam13465
    Location:201 → 226
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    124054432..124075349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249866.3 → XP_011248168.1  uncharacterized protein LOC630836 isoform X1

    See identical proteins and their annotated locations for XP_011248168.1

    Conserved Domains (3) summary
    COG5048
    Location:119 → 475
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:207 → 227
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:50 → 90
    KRAB; KRAB box

  2. XM_036155167.1 → XP_036011060.1  uncharacterized protein LOC630836 isoform X2

    Conserved Domains (1) summary
    pfam01352
    Location:29 → 69
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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