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H2-K2 histocompatibility 2, K region locus 2 [ Mus musculus (house mouse) ]

Gene ID: 630499, updated on 8-Feb-2024

Summary

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Official Symbol
H2-K2provided by MGI
Official Full Name
histocompatibility 2, K region locus 2provided by MGI
Primary source
MGI:MGI:95906
See related
Ensembl:ENSMUSG00000121503 AllianceGenome:MGI:95906
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
H-2K1; H-2K2; H2-K1; Gm7035; H-2K1K; EG630499
Expression
Broad expression in spleen adult (RPKM 73.6), liver adult (RPKM 63.2) and 17 other tissues See more
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Genomic context

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See H2-K2 in Genome Data Viewer
Location:
17 17.98 cM; 17 B1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (34193633..34197765, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (33974659..33978791, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8668 Neighboring gene ribosomal protein S18 Neighboring gene STARR-positive B cell enhancer ABC_E3199 Neighboring gene VPS52 GARP complex subunit Neighboring gene predicted gene, 23111 Neighboring gene STARR-positive B cell enhancer ABC_E2483 Neighboring gene STARR-seq mESC enhancer starr_42421 Neighboring gene predicted gene, 53998 Neighboring gene expressed sequence AA388235

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cloning and sequence analysis of the H2-K2(b) gene reveals that it is a pseudogene. Uzgare RP, et al. Immunogenetics, 1999 Oct. PMID 10541816
  2. Alternative pre-mRNA splicing of Kj eliminates a sequence that is unique to H-2K transcripts. Pogulis RJ, et al. Mol Immunol, 1994 Feb. PMID 8114769
  3. Mouse histocompatibility genes: structure and organisation of a Kd gene. Kvist S, et al. EMBO J, 1983. PMID 11894934, Free PMC Article
  4. Structural analysis of H-2Kj and H-2Ku. Pogulis RJ, et al. Immunogenetics, 1994. PMID 8168857
  5. Sequence analysis of the C3H H-2K1k gene: relationship to the H-2 loci. Watts S, et al. Immunogenetics, 1989. PMID 2714856

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • histocompatibility 2, K region locus 1
  • predicted pseudogene 7035

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004446.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR974462
    Related
    ENSMUST00000241639.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    34193633..34197765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001378.1: Suppressed sequence

    Description
    NG_001378.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

  2. NG_001378.1: Suppressed sequence

    Description
    NG_001378.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

  3. NM_001081015.1: Suppressed sequence

    Description
    NM_001081015.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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