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Gm13034 predicted gene 13034 [ Mus musculus (house mouse) ]

Gene ID: 627585, updated on 8-Feb-2024

Summary

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Official Symbol
Gm13034provided by MGI
Official Full Name
predicted gene 13034provided by MGI
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene
Primary source
MGI:MGI:3650252
See related
AllianceGenome:MGI:3650252
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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Genomic context

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Location:
4 E1; 4 78.36 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (146004094..146005288)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (146067524..146068718)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_12036 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145446019-145446319 Neighboring gene STARR-seq mESC enhancer starr_12037 Neighboring gene STARR-seq mESC enhancer starr_12038 Neighboring gene STARR-seq mESC enhancer starr_12039 Neighboring gene STARR-seq mESC enhancer starr_12040 Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:145479925-145480225 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145482093-145482393 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145483669-145483970 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146017850-146018151 Neighboring gene STARR-seq mESC enhancer starr_12043 Neighboring gene STARR-seq mESC enhancer starr_12044 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene predicted gene 13035 Neighboring gene vomeronasal 2, receptor, pseudogene 17 Neighboring gene zinc finger protein 987

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_030771.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK141203, BC139113

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    146004094..146005288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039233.2: Suppressed sequence

    Description
    NM_001039233.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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