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Zfp800 zinc finger protein 800 [ Mus musculus (house mouse) ]

Gene ID: 627049, updated on 5-Mar-2024

Summary

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Official Symbol
Zfp800provided by MGI
Official Full Name
zinc finger protein 800provided by MGI
Primary source
MGI:MGI:1889334
See related
Ensembl:ENSMUSG00000039841 AllianceGenome:MGI:1889334
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Znf800
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF800 (zinc finger protein 800). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver E14 (RPKM 3.2), liver E14.5 (RPKM 3.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
6 A3.2- A3.3; 6 11.99 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (28210543..28398010, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (28210548..28398033, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor, metabotropic 8 Neighboring gene STARR-seq mESC enhancer starr_15404 Neighboring gene microRNA 592 Neighboring gene STARR-seq mESC enhancer starr_15405 Neighboring gene STARR-seq mESC enhancer starr_15406 Neighboring gene predicted gene, 52896 Neighboring gene RIKEN cDNA 6530409C15 gene Neighboring gene STARR-seq mESC enhancer starr_15407 Neighboring gene STARR-seq mESC enhancer starr_15408 Neighboring gene STARR-seq mESC enhancer starr_15409 Neighboring gene STARR-positive B cell enhancer mm9_chr6:28371614-28371915 Neighboring gene kelch domain containing pseudogene Neighboring gene fascin actin-bundling protein 3 Neighboring gene golgi coiled coil 1 Neighboring gene ADP-ribosylation factor 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A developmental lineage-based gene co-expression network for mouse pancreatic β-cells reveals a role for Zfp800 in pancreas development. Osipovich AB, et al. Development, 2021 Mar 21. PMID 33653874, Free PMC Article
  2. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A developmental lineage-based gene co-expression network for mouse pancreatic beta-cells reveals a role for Zfp800 in pancreas development.
    Title: A developmental lineage-based gene co-expression network for mouse pancreatic β-cells reveals a role for Zfp800 in pancreas development.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within acinar cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within endocrine pancreas development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 800

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081678.3 → NP_001075147.1  zinc finger protein 800 isoform a

    See identical proteins and their annotated locations for NP_001075147.1

    Status: VALIDATED

    Source sequence(s)
    AC068501
    Consensus CDS
    CCDS39445.1
    UniProtKB/Swiss-Prot
    Q0VEE6
    UniProtKB/TrEMBL
    B7ZMR9
    Related
    ENSMUSP00000110976.3, ENSMUST00000115321.9
    Conserved Domains (5) summary
    sd00018
    Location:616 → 638
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:486 → 506
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:616 → 638
    zf-C2H2; Zinc finger, C2H2 type
    pfam16622
    Location:357 → 383
    zf-C2H2_11; zinc-finger C2H2-type
    pfam16624
    Location:391 → 483
    zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

  2. NM_001364595.2 → NP_001351524.1  zinc finger protein 800 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC068501
    Consensus CDS
    CCDS39445.1
    UniProtKB/Swiss-Prot
    Q0VEE6
    UniProtKB/TrEMBL
    B7ZMR9
    Related
    ENSMUSP00000110975.2, ENSMUST00000115320.8
    Conserved Domains (5) summary
    sd00018
    Location:616 → 638
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:486 → 506
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:616 → 638
    zf-C2H2; Zinc finger, C2H2 type
    pfam16622
    Location:357 → 383
    zf-C2H2_11; zinc-finger C2H2-type
    pfam16624
    Location:391 → 483
    zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

  3. NM_001364596.2 → NP_001351525.1  zinc finger protein 800 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC068501, AC068608
    Consensus CDS
    CCDS39445.1
    UniProtKB/Swiss-Prot
    Q0VEE6
    UniProtKB/TrEMBL
    B7ZMR9
    Related
    ENSMUSP00000039222.5, ENSMUST00000035930.11
    Conserved Domains (5) summary
    sd00018
    Location:616 → 638
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:486 → 506
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:616 → 638
    zf-C2H2; Zinc finger, C2H2 type
    pfam16622
    Location:357 → 383
    zf-C2H2_11; zinc-finger C2H2-type
    pfam16624
    Location:391 → 483
    zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

  4. NM_001411802.1 → NP_001398731.1  zinc finger protein 800 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC068501
    UniProtKB/Swiss-Prot
    Q0VEE6
    UniProtKB/TrEMBL
    B7ZMR9

  5. NM_001411803.1 → NP_001398732.1  zinc finger protein 800 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC068501
    UniProtKB/Swiss-Prot
    Q0VEE6
    UniProtKB/TrEMBL
    B7ZMR9

  6. NM_001411804.1 → NP_001398733.1  zinc finger protein 800 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC068501

  7. NM_001411805.1 → NP_001398734.1  zinc finger protein 800 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC068501

  8. NM_001411806.1 → NP_001398735.1  zinc finger protein 800 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC068501

  9. NM_001411807.1 → NP_001398736.1  zinc finger protein 800 isoform c

    Status: VALIDATED

    Source sequence(s)
    AC068501

  10. NM_001411808.1 → NP_001398737.1  zinc finger protein 800 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC068501

  11. NM_001411809.1 → NP_001398738.1  zinc finger protein 800 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC068501

  12. NM_001411810.1 → NP_001398739.1  zinc finger protein 800 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC068501

  13. NM_001411811.1 → NP_001398740.1  zinc finger protein 800 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC068501

  14. NM_001411812.1 → NP_001398741.1  zinc finger protein 800 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC068501, AC068608

  15. NM_001411813.1 → NP_001398742.1  zinc finger protein 800 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC068501, AC068608

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    28210543..28398010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011241073.4 → XP_011239375.1  zinc finger protein 800 isoform X1

    See identical proteins and their annotated locations for XP_011239375.1

    Conserved Domains (5) summary
    sd00018
    Location:616 → 638
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:486 → 506
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:616 → 638
    zf-C2H2; Zinc finger, C2H2 type
    pfam16622
    Location:357 → 383
    zf-C2H2_11; zinc-finger C2H2-type
    pfam16624
    Location:391 → 483
    zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

  2. XM_006505149.4 → XP_006505212.1  zinc finger protein 800 isoform X1

    See identical proteins and their annotated locations for XP_006505212.1

    Conserved Domains (5) summary
    sd00018
    Location:616 → 638
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:486 → 506
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:616 → 638
    zf-C2H2; Zinc finger, C2H2 type
    pfam16622
    Location:357 → 383
    zf-C2H2_11; zinc-finger C2H2-type
    pfam16624
    Location:391 → 483
    zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

  3. XM_006505148.5 → XP_006505211.1  zinc finger protein 800 isoform X1

    See identical proteins and their annotated locations for XP_006505211.1

    Conserved Domains (5) summary
    sd00018
    Location:616 → 638
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:486 → 506
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:616 → 638
    zf-C2H2; Zinc finger, C2H2 type
    pfam16622
    Location:357 → 383
    zf-C2H2_11; zinc-finger C2H2-type
    pfam16624
    Location:391 → 483
    zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0VEE6.1 GenPept UniProtKB/Swiss-Prot:Q0VEE6

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