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Prr19 proline rich 19 [ Mus musculus (house mouse) ]

Gene ID: 623131, updated on 5-Mar-2024

Summary

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Official Symbol
Prr19provided by MGI
Official Full Name
proline rich 19provided by MGI
Primary source
MGI:MGI:3648539
See related
Ensembl:ENSMUSG00000058741 AllianceGenome:MGI:3648539
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG623131
Summary
Orthologous to human PRR19 (proline rich 19). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 30.9) See more
Orthologs
human all
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Genomic context

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See Prr19 in Genome Data Viewer
Location:
7 A3; 7 13.74 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (25000784..25003565)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (25301359..25304140)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_18299 Neighboring gene predicted gene, 45974 Neighboring gene STARR-positive B cell enhancer ABC_E8154 Neighboring gene capicua transcriptional repressor Neighboring gene STARR-positive B cell enhancer ABC_E2226 Neighboring gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 3 Neighboring gene STARR-seq mESC enhancer starr_18300 Neighboring gene transmembrane protein 145 Neighboring gene multiple EGF-like-domains 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Proline-rich protein PRR19 functions with cyclin-like CNTD1 to promote meiotic crossing over in mouse. Bondarieva A, et al. Nat Commun, 2020 Jun 18. PMID 32555348, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
proline-rich protein 19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081294.1 → NP_001074763.1  proline-rich protein 19

    See identical proteins and their annotated locations for NP_001074763.1

    Status: PROVISIONAL

    Source sequence(s)
    AC156992
    Consensus CDS
    CCDS52147.1
    UniProtKB/Swiss-Prot
    B2RW88
    Related
    ENSMUSP00000104047.2, ENSMUST00000080288.5
    Conserved Domains (1) summary
    pfam15455
    Location:1 → 366
    Pro-rich_19; Proline-rich 19

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    25000784..25003565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322433.1 → XP_017177922.1  proline-rich protein 19 isoform X1

    UniProtKB/Swiss-Prot
    B2RW88
    Conserved Domains (1) summary
    pfam15455
    Location:1 → 366
    Pro-rich_19; Proline-rich 19

  2. XM_006540262.1 → XP_006540325.1  proline-rich protein 19 isoform X1

    See identical proteins and their annotated locations for XP_006540325.1

    UniProtKB/Swiss-Prot
    B2RW88
    Conserved Domains (1) summary
    pfam15455
    Location:1 → 366
    Pro-rich_19; Proline-rich 19
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2RW88.1 GenPept UniProtKB/Swiss-Prot:B2RW88

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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