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Gm11780 predicted gene 11780 [ Mus musculus (house mouse) ]

Gene ID: 622019, updated on 8-Feb-2024

Summary

Official Symbol
Gm11780provided by MGI
Official Full Name
predicted gene 11780provided by MGI
Primary source
MGI:MGI:3650485
See related
AllianceGenome:MGI:3650485
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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Genomic context

Location:
4 A1; 4 2.54 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (4527771..4529457, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (4527774..4529458, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A830012C17 gene Neighboring gene STARR-seq mESC enhancer starr_09433 Neighboring gene STARR-seq mESC enhancer starr_09434 Neighboring gene STARR-seq mESC enhancer starr_09435 Neighboring gene STARR-seq mESC enhancer starr_09436 Neighboring gene STARR-seq mESC enhancer starr_09437 Neighboring gene STARR-seq mESC enhancer starr_09438 Neighboring gene STARR-seq mESC enhancer starr_09439 Neighboring gene STARR-seq mESC enhancer starr_09440 Neighboring gene predicted gene, 33007 Neighboring gene STARR-seq mESC enhancer starr_09442 Neighboring gene STARR-seq mESC enhancer starr_09443 Neighboring gene STARR-seq mESC enhancer starr_09444 Neighboring gene STARR-seq mESC enhancer starr_09445 Neighboring gene predicted gene, 33057 Neighboring gene predicted gene, 33182 Neighboring gene STARR-seq mESC enhancer starr_09447 Neighboring gene predicted gene, 33259

Genomic regions, transcripts, and products

General protein information

Preferred Names
Protein tyrosine phosphatase type IVA 2
Names
protein tyrosine phosphatase 4a2 pseudogene
protein tyrosine phosphatase 4a2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277919.2NP_001264848.1  Protein tyrosine phosphatase type IVA 2

    Status: VALIDATED

    Source sequence(s)
    AL732514
    Conserved Domains (1) summary
    cl21483
    Location:8157
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    4527771..4529457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_016825.1: Suppressed sequence

    Description
    NG_016825.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.