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2900079G21Rik RIKEN cDNA 2900079G21 gene [ Mus musculus (house mouse) ]

Gene ID: 620760, updated on 8-Feb-2024

Summary

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Official Symbol
2900079G21Rikprovided by MGI
Official Full Name
RIKEN cDNA 2900079G21 geneprovided by MGI
Primary source
MGI:MGI:1920268
See related
Ensembl:ENSMUSG00000087038 AllianceGenome:MGI:1920268
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm6179; C130083B14
Expression
Biased expression in thymus adult (RPKM 3.4), frontal lobe adult (RPKM 2.7) and 6 other tissues See more
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Genomic context

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See 2900079G21Rik in Genome Data Viewer
Location:
9 F3; 9 62.55 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (112063345..112177993)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (112234277..112348925)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene cyclic AMP-regulated phosphoprotein, 21 Neighboring gene microRNA 128-2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112110378-112110659 Neighboring gene RIKEN cDNA 2310075C17 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112121946-112122147 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112127556-112127739 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112129224-112129377 Neighboring gene STARR-seq mESC enhancer starr_25304 Neighboring gene STARR-seq mESC enhancer starr_25305 Neighboring gene predicted gene, 24957 Neighboring gene STARR-seq mESC enhancer starr_25306 Neighboring gene STARR-seq mESC enhancer starr_25307 Neighboring gene selection and upkeep of intraepithelial T cells 4 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015468.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This transcript is variant (1).
    Source sequence(s)
    BC056188
    Related
    ENSMUST00000139552.4

  2. NR_033431.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AK013806, BE946996
    Related
    ENSMUST00000149308.5

  3. NR_033432.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks the 3' exon and contains three alternate 3' exons, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AC100550, AK013806, AK048592
    Related
    ENSMUST00000144424.9

  4. NR_033433.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) represents use of an internal promoter and lacks both the 5' and 3' exon and contains four additional exons, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AK047318
    Related
    ENSMUST00000163302.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    112063345..112177993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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