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LINC01298 long intergenic non-protein coding RNA 1298 [ Homo sapiens (human) ]

Gene ID: 619344, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01298provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1298provided by HGNC
Primary source
HGNC:HGNC:32292
See related
Ensembl:ENSG00000253351 AllianceGenome:HGNC:32292
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C8orf69
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01298 in Genome Data Viewer
Location:
8q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (95207007..95216374, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (96332247..96341628, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (96219235..96228602, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19382 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19383 Neighboring gene uncharacterized LOC124901982 Neighboring gene CRISPRi-validated cis-regulatory element chr8.2347 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19384 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27649 Neighboring gene pleckstrin homology and FYVE domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27651 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27652 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27653 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27655 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:96281415-96282054 Neighboring gene CFAP418 antisense RNA 1 Neighboring gene tRNA-Ser (anticodon AGA) 2-5 Neighboring gene cilia and flagella associated protein 418

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046232.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA469917, AP003466, AW103292
    Related
    ENST00000523171.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    95207007..95216374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    96332247..96341628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases