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Muc3a mucin 3A, cell surface associated [ Mus musculus (house mouse) ]

Gene ID: 619309, updated on 5-Mar-2024

Summary

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Official Symbol
Muc3aprovided by MGI
Official Full Name
mucin 3A, cell surface associatedprovided by MGI
Primary source
MGI:MGI:3588263
See related
AllianceGenome:MGI:3588263
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A630081J09Rik
Summary
Orthologous to human MUC3A (mucin 3A, cell surface associated). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: suggests misassembly
Orthologs
human all
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Genomic context

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Location:
5 G2; 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (137243263..137276564, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (137208805..137212545, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40348 Neighboring gene predicted gene, 31160 Neighboring gene peptidyl-prolyl cis-trans isomerase G-like Neighboring gene predicted gene 42456 Neighboring gene acetylcholinesterase Neighboring gene microRNA 8116

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in cell projection morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in synapse IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
mucin-3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    137243263..137276564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165656.1 → XP_036021549.1  mucin-3A isoform X3

    Conserved Domains (3) summary
    COG3889
    Location:144 → 261
    COG3889; Predicted periplasmic protein [Function unknown]
    cd00055
    Location:261 → 293
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01390
    Location:337 → 419
    SEA; SEA domain

  2. XM_036165655.1 → XP_036021548.1  mucin-3A isoform X2

    Conserved Domains (2) summary
    COG3889
    Location:2442 → 2559
    COG3889; Predicted periplasmic protein [Function unknown]
    cd00055
    Location:2559 → 2591
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...

  3. XM_036165654.1 → XP_036021547.1  mucin-3A isoform X1

    Conserved Domains (4) summary
    PLN02217
    Location:1642 → 1749
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:2442 → 2559
    COG3889; Predicted periplasmic protein [Function unknown]
    cd00055
    Location:2559 → 2591
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01390
    Location:2635 → 2717
    SEA; SEA domain

  4. XM_036165657.1 → XP_036021550.1  mucin-3A isoform X4

    Conserved Domains (1) summary
    pfam01390
    Location:8 → 90
    SEA; SEA domain

  5. XM_036165658.1 → XP_036021551.1  mucin-3A isoform X5

RNA

  1. XR_004942657.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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