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Npvf neuropeptide VF precursor [ Mus musculus (house mouse) ]

Gene ID: 60531, updated on 5-Mar-2024

Summary

Official Symbol
Npvfprovided by MGI
Official Full Name
neuropeptide VF precursorprovided by MGI
Primary source
MGI:MGI:1926488
See related
Ensembl:ENSMUSG00000029831 AllianceGenome:MGI:1926488
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rfrp
Summary
Predicted to enable signaling receptor binding activity. Predicted to be involved in negative regulation of gonadotropin secretion; neuropeptide signaling pathway; and sensory perception of pain. Predicted to be located in extracellular region. Is expressed in brain; cerebral cortex; dorsomedial hypothalamic nucleus; hypothalamus; and hypothalamus mantle layer. Orthologous to human NPVF (neuropeptide VF precursor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
6 B2.3; 6 24.34 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (50627652..50631425, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (50650672..50654445, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene PRP18 pre-mRNA processing factor 18 homolog pseudogene Neighboring gene Crn, crooked neck-like 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_15853 Neighboring gene predicted gene, 38808 Neighboring gene aurora kinase A pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables signaling receptor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in negative regulation of gonadotropin secretion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of gonadotropin secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in neuropeptide signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in neuropeptide signaling pathway ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
pro-FMRFamide-related neuropeptide VF
Names
FMRFamide-related peptides
RFamide-related peptide

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021892.2NP_068692.1  pro-FMRFamide-related neuropeptide VF precursor

    See identical proteins and their annotated locations for NP_068692.1

    Status: VALIDATED

    Source sequence(s)
    AC156399, AK138200
    Consensus CDS
    CCDS20133.1
    UniProtKB/Swiss-Prot
    Q920A4, Q9ESQ8
    UniProtKB/TrEMBL
    Q3UUP8
    Related
    ENSMUSP00000031853.8, ENSMUST00000031853.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    50627652..50631425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)