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Hgh1 HGH1 homolog [ Mus musculus (house mouse) ]

Gene ID: 59053, updated on 5-Mar-2024

Summary

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Official Symbol
Hgh1provided by MGI
Official Full Name
HGH1 homologprovided by MGI
Primary source
MGI:MGI:1930628
See related
Ensembl:ENSMUSG00000022554 AllianceGenome:MGI:1930628
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Brp16; Fam203a; MNCb-5873; D15Ertd741e
Summary
Is expressed in central nervous system and retina. Orthologous to human HGH1 (HGH1 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 9.8), ovary adult (RPKM 9.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Hgh1 in Genome Data Viewer
Location:
15 D3; 15 35.78 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76253064..76256056)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (76368864..76371854)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III Neighboring gene STARR-seq mESC enhancer starr_39052 Neighboring gene WD repeat domain 97 Neighboring gene STARR-positive B cell enhancer ABC_E11592 Neighboring gene STARR-positive B cell enhancer ABC_E1912 Neighboring gene testis-specific serine kinase 5 Neighboring gene maestro heat-like repeat family member 1 Neighboring gene microRNA 6954

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects. Desai J, et al. Hum Mol Genet, 2006 Apr 15. PMID 16537572
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein HGH1 homolog
Names
brain protein 16
family with sequence similarity 203, member A
protein FAM203A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001411930.1 → NP_001398859.1  protein HGH1 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC155074

  2. NM_021555.3 → NP_067530.2  protein HGH1 homolog isoform 1

    See identical proteins and their annotated locations for NP_067530.2

    Status: VALIDATED

    Source sequence(s)
    AC155074
    Consensus CDS
    CCDS27569.1
    UniProtKB/Swiss-Prot
    Q8C3I8, Q9JJF4
    Related
    ENSMUSP00000023213.7, ENSMUST00000023213.8
    Conserved Domains (2) summary
    pfam04063
    Location:120 → 294
    DUF383; Domain of unknown function (DUF383)
    pfam04064
    Location:299 → 351
    DUF384; Domain of unknown function (DUF384)

RNA

  1. NR_177984.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC155074

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    76253064..76256056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_384030.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C3I8.1 GenPept UniProtKB/Swiss-Prot:Q8C3I8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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