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Efcc1 EF hand and coiled-coil domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 58229, updated on 5-Mar-2024

Summary

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Official Symbol
Efcc1provided by MGI
Official Full Name
EF hand and coiled-coil domain containing 1provided by MGI
Primary source
MGI:MGI:3611451
See related
Ensembl:ENSMUSG00000068263 AllianceGenome:MGI:3611451
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ccdc48
Summary
Predicted to enable calcium ion binding activity. Predicted to be active in cytosol. Orthologous to human EFCC1 (EF-hand and coiled-coil domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in lung adult (RPKM 3.0), bladder adult (RPKM 1.5) and 24 other tissues See more
Orthologs
human all
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Genomic context

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Location:
6 D1; 6 39.02 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87707577..87739410)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87730590..87762428)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene aprataxin and PNKP like factor Neighboring gene predicted gene, 44097 Neighboring gene STARR-positive B cell enhancer ABC_E9276 Neighboring gene RIKEN cDNA E230015B07 gene Neighboring gene STARR-positive B cell enhancer ABC_E1067 Neighboring gene cilia and flagella associated protein 92 Neighboring gene STARR-seq mESC enhancer starr_16564 Neighboring gene STARR-positive B cell enhancer ABC_E9277 Neighboring gene predicted gene, 34414 Neighboring gene 60S ribosomal protein L3 related Neighboring gene glycoprotein 9 platelet

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
EF-hand and coiled-coil domain-containing protein 1
Names
EF-hand domain-containing protein ENSP00000381169 homolog
coiled-coil domain containing 48
coiled-coil domain-containing protein 48

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159697.1 → NP_001153169.1  EF-hand and coiled-coil domain-containing protein 1

    See identical proteins and their annotated locations for NP_001153169.1

    Status: PROVISIONAL

    Source sequence(s)
    AC158626
    Consensus CDS
    CCDS51840.1
    UniProtKB/Swiss-Prot
    Q9JJF6
    Related
    ENSMUSP00000138649.2, ENSMUST00000159570.9
    Conserved Domains (1) summary
    pfam15799
    Location:7 → 558
    CCD48; Coiled-coil domain-containing protein 48

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    87707577..87739410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506438.3 → XP_006506501.1  EF-hand and coiled-coil domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A0A0MQ84
    Related
    ENSMUSP00000032132.9, ENSMUST00000032132.9
    Conserved Domains (1) summary
    pfam15799
    Location:7 → 559
    CCD48; Coiled-coil domain-containing protein 48

  2. XM_006506440.5 → XP_006506503.1  EF-hand and coiled-coil domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam15799
    Location:7 → 447
    CCD48; Coiled-coil domain-containing protein 48

  3. XM_017321691.3 → XP_017177180.1  EF-hand and coiled-coil domain-containing protein 1 isoform X2

    UniProtKB/Swiss-Prot
    Q9JJF6
    Conserved Domains (1) summary
    pfam15799
    Location:7 → 558
    CCD48; Coiled-coil domain-containing protein 48

  4. XM_030255521.2 → XP_030111381.1  EF-hand and coiled-coil domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    B9EIH1
    Conserved Domains (1) summary
    pfam15799
    Location:7 → 362
    CCD48; Coiled-coil domain-containing protein 48

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_021418.2: Suppressed sequence

    Description
    NM_021418.2: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9JJF6.2 GenPept UniProtKB/Swiss-Prot:Q9JJF6

Gene LinkOut

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