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Krcc1 lysine-rich coiled-coil 1 [ Mus musculus (house mouse) ]

Gene ID: 57896, updated on 5-Mar-2024

Summary

Official Symbol
Krcc1provided by MGI
Official Full Name
lysine-rich coiled-coil 1provided by MGI
Primary source
MGI:MGI:1889377
See related
Ensembl:ENSMUSG00000053012 AllianceGenome:MGI:1889377
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human KRCC1 (lysine rich coiled-coil 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 17.2), placenta adult (RPKM 12.1) and 28 other tissues See more
Orthologs
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Genomic context

Location:
6 C1; 6 32.14 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (71248661..71263809)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (71271677..71286825)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene fatty acid binding protein 1, liver Neighboring gene SET and MYND domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_16258 Neighboring gene STARR-seq mESC enhancer starr_16259 Neighboring gene microRNA 8112 Neighboring gene STARR-seq mESC enhancer starr_16261 Neighboring gene predicted gene 1070 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:71266617-71266800 Neighboring gene predicted gene, 38828

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
lysine-rich coiled-coil protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001354706.1NP_001341635.1  lysine-rich coiled-coil protein 1

    Status: VALIDATED

    Source sequence(s)
    AC160090, AK146818, AW912446
    Consensus CDS
    CCDS20228.1
    UniProtKB/Swiss-Prot
    Q99JT5
    UniProtKB/TrEMBL
    Q8BWL9
    Related
    ENSMUSP00000145416.2, ENSMUST00000204436.3
    Conserved Domains (1) summary
    pfam10243
    Location:146236
    MIP-T3; Microtubule-binding protein MIP-T3
  2. NM_145568.4NP_663543.1  lysine-rich coiled-coil protein 1

    See identical proteins and their annotated locations for NP_663543.1

    Status: VALIDATED

    Source sequence(s)
    AC160090, AW912446, BC069863
    Consensus CDS
    CCDS20228.1
    UniProtKB/Swiss-Prot
    Q99JT5
    UniProtKB/TrEMBL
    Q8BWL9
    Related
    ENSMUSP00000130252.2, ENSMUST00000168700.7
    Conserved Domains (1) summary
    pfam10243
    Location:146236
    MIP-T3; Microtubule-binding protein MIP-T3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    71248661..71263809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)